Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb4Q6P8W9 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Hmgb4Q6P8W9 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Hmgb4Q6P8W9 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Hmgb4Q6P8W9 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 AC154725.1-201ENSMUST00000224826 1961 ntBASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm10327-201ENSMUST00000105222 1002 ntBASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm11793-201ENSMUST00000120433 981 ntBASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm13342-201ENSMUST00000121055 207 ntBASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm6222-202ENSMUST00000182143 629 ntBASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm44364-201ENSMUST00000198368 141 ntBASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm4935-201ENSMUST00000221316 1198 ntBASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Hmgb4Q6P8W9 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 AC153366.2-201ENSMUST00000219461 1984 ntBASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Gm43423-201ENSMUST00000198390 2094 ntBASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Hmgb4Q6P8W9 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Hmgb4Q6P8W9 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb4Q6P8W9 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Hmgb4Q6P8W9 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
Hmgb4Q6P8W9 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb4Q6P8W9 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 71.5 ms