Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Gm15222-202ENSMUST00000228667 1726 ntBASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC11.14□□□□□ -0.63
Trav5d-4Q5R1F6 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gm9115-201ENSMUST00000120192 1348 ntBASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gm11918-201ENSMUST00000121660 179 ntBASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gm11978-201ENSMUST00000122315 466 ntBASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gm6745-201ENSMUST00000199216 526 ntBASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gm38671-201ENSMUST00000200573 130 ntBASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gm45384-201ENSMUST00000210451 277 ntBASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
Trav5d-4Q5R1F6 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Gm5912-201ENSMUST00000122282 1438 ntBASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 AC241621.2-201ENSMUST00000223991 2151 ntBASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Mir692-1-201ENSMUST00000102263 109 ntBASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Trav5d-4Q5R1F6 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms