Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm45266-201ENSMUST00000210111 2173 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm28760-201ENSMUST00000185995 736 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm18062-201ENSMUST00000208020 547 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm18055-201ENSMUST00000208254 547 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm17330-201ENSMUST00000221047 165 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Matn2-203ENSMUST00000226766 3252 ntBASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col28a1Q2UY11 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Gm11918-201ENSMUST00000121660 179 ntBASIC12.59□□□□□ -0.39
Col28a1Q2UY11 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Gm21854-201ENSMUST00000179901 471 ntBASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Gm18624-201ENSMUST00000220966 658 ntBASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col28a1Q2UY11 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Col28a1Q2UY11 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Col28a1Q2UY11 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Col28a1Q2UY11 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Col28a1Q2UY11 AC159195.1-201ENSMUST00000225867 2086 ntBASIC12.58□□□□□ -0.39
Col28a1Q2UY11 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Col28a1Q2UY11 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC12.58□□□□□ -0.39
Col28a1Q2UY11 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.58□□□□□ -0.4
Col28a1Q2UY11 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms