Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC15□□□□□ -0.01
Traf1P39428 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15□□□□□ -0.01
Traf1P39428 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Traf1P39428 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Traf1P39428 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Traf1P39428 Gm45638-201ENSMUST00000211507 2878 ntBASIC14.99□□□□□ -0.01
Traf1P39428 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC14.99□□□□□ -0.01
Traf1P39428 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.99□□□□□ -0.01
Traf1P39428 Gm13342-201ENSMUST00000121055 207 ntBASIC14.99□□□□□ -0.01
Traf1P39428 Gm24548-201ENSMUST00000158650 108 ntBASIC14.99□□□□□ -0.01
Traf1P39428 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC14.99□□□□□ -0.01
Traf1P39428 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC14.99□□□□□ -0.01
Traf1P39428 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.99□□□□□ -0.01
Traf1P39428 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.99□□□□□ -0.01
Traf1P39428 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.99□□□□□ -0.01
Traf1P39428 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Traf1P39428 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
Traf1P39428 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Traf1P39428 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Traf1P39428 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.98□□□□□ -0.01
Traf1P39428 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC14.98□□□□□ -0.01
Traf1P39428 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.98□□□□□ -0.01
Traf1P39428 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC14.98□□□□□ -0.01
Traf1P39428 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.98□□□□□ -0.01
Traf1P39428 Mospd4-201ENSMUST00000180618 576 ntBASIC14.98□□□□□ -0.01
Traf1P39428 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Gm45930-201ENSMUST00000221330 292 ntBASIC14.98□□□□□ -0.01
Traf1P39428 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14.98□□□□□ -0.01
Traf1P39428 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC14.98□□□□□ -0.01
Traf1P39428 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.98□□□□□ -0.01
Traf1P39428 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Traf1P39428 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Traf1P39428 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Traf1P39428 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Gm3890-201ENSMUST00000182416 207 ntBASIC14.97□□□□□ -0.01
Traf1P39428 Gm27516-201ENSMUST00000184237 98 ntBASIC14.97□□□□□ -0.01
Traf1P39428 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC14.97□□□□□ -0.01
Traf1P39428 Gm8099-201ENSMUST00000200510 742 ntBASIC14.97□□□□□ -0.01
Traf1P39428 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.97□□□□□ -0.01
Traf1P39428 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Traf1P39428 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Traf1P39428 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Traf1P39428 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 103.5 ms