Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.35□□□□□ -0.43
Lire1P11260 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lire1P11260 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.34□□□□□ -0.43
Lire1P11260 AC169511.2-201ENSMUST00000226674 2063 ntBASIC12.34□□□□□ -0.43
Lire1P11260 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.34□□□□□ -0.43
Lire1P11260 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Lire1P11260 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC12.34□□□□□ -0.43
Lire1P11260 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lire1P11260 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Lire1P11260 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.34□□□□□ -0.43
Lire1P11260 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.34□□□□□ -0.43
Lire1P11260 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Lire1P11260 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Gm18262-201ENSMUST00000222560 1946 ntBASIC12.34□□□□□ -0.43
Lire1P11260 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.34□□□□□ -0.43
Lire1P11260 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Lire1P11260 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Lire1P11260 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.33□□□□□ -0.43
Lire1P11260 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
Lire1P11260 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Lire1P11260 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Lire1P11260 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.33□□□□□ -0.44
Lire1P11260 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 Gm21470-201ENSMUST00000187680 696 ntBASIC12.33□□□□□ -0.44
Lire1P11260 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 Ighv8-14-201ENSMUST00000196781 358 ntBASIC12.33□□□□□ -0.44
Lire1P11260 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.33□□□□□ -0.44
Lire1P11260 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.33□□□□□ -0.44
Lire1P11260 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 Casc1-208ENSMUST00000204105 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.33□□□□□ -0.44
Lire1P11260 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.33□□□□□ -0.44
Lire1P11260 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Lire1P11260 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
Lire1P11260 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms