Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC15.28■□□□□ 0.04
Col3a1P08121 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Rmrp-201ENSMUST00000157463 271 ntBASIC15.28■□□□□ 0.04
Col3a1P08121 Mir6979-201ENSMUST00000183927 56 ntBASIC15.28■□□□□ 0.04
Col3a1P08121 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC15.28■□□□□ 0.04
Col3a1P08121 AL732506.1-201ENSMUST00000226420 281 ntBASIC15.28■□□□□ 0.04
Col3a1P08121 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC15.28■□□□□ 0.04
Col3a1P08121 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Col3a1P08121 Gm45495-201ENSMUST00000200940 1700 ntBASIC15.28■□□□□ 0.04
Col3a1P08121 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col3a1P08121 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Col3a1P08121 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC15.27■□□□□ 0.04
Col3a1P08121 Gm14263-201ENSMUST00000117955 746 ntBASIC15.27■□□□□ 0.04
Col3a1P08121 Gm4909-201ENSMUST00000118749 794 ntBASIC15.27■□□□□ 0.04
Col3a1P08121 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC15.27■□□□□ 0.04
Col3a1P08121 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC15.27■□□□□ 0.04
Col3a1P08121 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC15.27■□□□□ 0.04
Col3a1P08121 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 AC163667.3-201ENSMUST00000225774 222 ntBASIC15.27■□□□□ 0.04
Col3a1P08121 Gm10371-202ENSMUST00000228010 1081 ntBASIC15.27■□□□□ 0.04
Col3a1P08121 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Gm10312-201ENSMUST00000078515 489 ntBASIC15.27■□□□□ 0.04
Col3a1P08121 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col3a1P08121 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC15.27■□□□□ 0.03
Col3a1P08121 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Col3a1P08121 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Col3a1P08121 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC15.27■□□□□ 0.03
Col3a1P08121 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Gm8617-201ENSMUST00000118796 2222 ntBASIC15.27■□□□□ 0.03
Col3a1P08121 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC15.27■□□□□ 0.03
Col3a1P08121 Gm37666-201ENSMUST00000194110 866 ntBASIC15.27■□□□□ 0.03
Col3a1P08121 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC15.27■□□□□ 0.03
Col3a1P08121 Gm44262-201ENSMUST00000204969 372 ntBASIC15.27■□□□□ 0.03
Col3a1P08121 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC15.27■□□□□ 0.03
Col3a1P08121 AC166344.1-202ENSMUST00000224139 234 ntBASIC15.27■□□□□ 0.03
Col3a1P08121 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col3a1P08121 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Col3a1P08121 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC15.27■□□□□ 0.03
Col3a1P08121 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col3a1P08121 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col3a1P08121 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC15.26■□□□□ 0.03
Col3a1P08121 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC15.26■□□□□ 0.03
Col3a1P08121 Gm14644-201ENSMUST00000116671 647 ntBASIC15.26■□□□□ 0.03
Col3a1P08121 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Col3a1P08121 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col3a1P08121 Gm45598-202ENSMUST00000210719 986 ntBASIC15.26■□□□□ 0.03
Col3a1P08121 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC15.26■□□□□ 0.03
Col3a1P08121 Gzmn-202ENSMUST00000225535 989 ntBASIC15.26■□□□□ 0.03
Col3a1P08121 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col3a1P08121 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
Col3a1P08121 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col3a1P08121 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms