Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Trim3Q9R1R2 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim3Q9R1R2 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.22□□□□□ -0.45
Trim3Q9R1R2 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm17150-201ENSMUST00000165577 381 ntBASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm43433-201ENSMUST00000196573 481 ntBASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Trim3Q9R1R2 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.21□□□□□ -0.45
Trim3Q9R1R2 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms