Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Gm11978-201ENSMUST00000122315 466 ntBASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Vps28Q9D1C8 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Gm16479-201ENSMUST00000121706 932 ntBASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Gm8062-201ENSMUST00000139696 444 ntBASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Gm26185-201ENSMUST00000157692 266 ntBASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Gm5370-201ENSMUST00000187187 574 ntBASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 AC125350.2-201ENSMUST00000224737 727 ntBASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Vps28Q9D1C8 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gm44241-201ENSMUST00000203230 1662 ntBASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gm37424-201ENSMUST00000191727 561 ntBASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 84 ms