Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.29■□□□□ 0.04
Trim56Q80VI1 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Trim56Q80VI1 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Gm18916-201ENSMUST00000198264 1246 ntBASIC15.28■□□□□ 0.04
Trim56Q80VI1 AC154462.2-201ENSMUST00000227519 370 ntBASIC15.28■□□□□ 0.04
Trim56Q80VI1 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim56Q80VI1 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Gm12329-201ENSMUST00000120829 1007 ntBASIC15.27■□□□□ 0.04
Trim56Q80VI1 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Gm16379-201ENSMUST00000161469 348 ntBASIC15.27■□□□□ 0.04
Trim56Q80VI1 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trim56Q80VI1 Gm8762-201ENSMUST00000193486 339 ntBASIC15.27■□□□□ 0.04
Trim56Q80VI1 Gm38092-201ENSMUST00000195600 653 ntBASIC15.27■□□□□ 0.04
Trim56Q80VI1 Gm8099-201ENSMUST00000200510 742 ntBASIC15.27■□□□□ 0.04
Trim56Q80VI1 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim56Q80VI1 AC140406.1-201ENSMUST00000226481 465 ntBASIC15.27■□□□□ 0.04
Trim56Q80VI1 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim56Q80VI1 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 CT025610.1-201ENSMUST00000224552 1786 ntBASIC15.26■□□□□ 0.03
Trim56Q80VI1 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim56Q80VI1 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms