Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Usf1Q61069 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Usf1Q61069 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Gm13611-201ENSMUST00000118269 318 ntBASIC11.8□□□□□ -0.52
Usf1Q61069 Gm16481-201ENSMUST00000119074 1227 ntBASIC11.8□□□□□ -0.52
Usf1Q61069 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.8□□□□□ -0.52
Usf1Q61069 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC11.8□□□□□ -0.52
Usf1Q61069 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC11.8□□□□□ -0.52
Usf1Q61069 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.8□□□□□ -0.52
Usf1Q61069 Gm45118-201ENSMUST00000208928 825 ntBASIC11.8□□□□□ -0.52
Usf1Q61069 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.8□□□□□ -0.52
Usf1Q61069 Gm45925-201ENSMUST00000218882 744 ntBASIC11.8□□□□□ -0.52
Usf1Q61069 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Usf1Q61069 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Usf1Q61069 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usf1Q61069 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.8□□□□□ -0.52
Usf1Q61069 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Usf1Q61069 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC11.79□□□□□ -0.52
Usf1Q61069 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Gm5884-201ENSMUST00000036712 1479 ntBASIC11.79□□□□□ -0.52
Usf1Q61069 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.79□□□□□ -0.52
Usf1Q61069 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.79□□□□□ -0.52
Usf1Q61069 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Gm9550-201ENSMUST00000161130 862 ntBASIC11.79□□□□□ -0.52
Usf1Q61069 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC11.79□□□□□ -0.52
Usf1Q61069 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Usf1Q61069 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC11.79□□□□□ -0.52
Usf1Q61069 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Usf1Q61069 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Usf1Q61069 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Usf1Q61069 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Gm4864-201ENSMUST00000219894 1461 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Usf1Q61069 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Usf1Q61069 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Usf1Q61069 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Usf1Q61069 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Gm13296-201ENSMUST00000117854 997 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.78□□□□□ -0.52
Usf1Q61069 Gm23363-201ENSMUST00000175024 79 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Gm37201-201ENSMUST00000191845 523 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Gm38092-201ENSMUST00000195600 653 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Gm45433-201ENSMUST00000209386 247 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Usf1Q61069 Gm10312-201ENSMUST00000078515 489 ntBASIC11.78□□□□□ -0.52
Usf1Q61069 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Usf1Q61069 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms