Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm27438-201ENSMUST00000183480 110 ntBASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm8228-201ENSMUST00000189949 2192 ntBASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm9550-201ENSMUST00000161130 862 ntBASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ccdc88aQ5SNZ0 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.77□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm13813-201ENSMUST00000120998 787 ntBASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 AC140293.1-201ENSMUST00000225626 1247 ntBASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC14.77□□□□□ -0.05
Ccdc88aQ5SNZ0 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm9555-201ENSMUST00000200908 583 ntBASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 AC123665.1-201ENSMUST00000228204 438 ntBASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ccdc88aQ5SNZ0 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms