Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Gm43205-201ENSMUST00000198622 1968 ntBASIC13.38□□□□□ -0.27
Sox9Q04887 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.38□□□□□ -0.27
Sox9Q04887 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC13.38□□□□□ -0.27
Sox9Q04887 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC13.38□□□□□ -0.27
Sox9Q04887 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Sox9Q04887 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC13.38□□□□□ -0.27
Sox9Q04887 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13.38□□□□□ -0.27
Sox9Q04887 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Gm25951-201ENSMUST00000175330 64 ntBASIC13.38□□□□□ -0.27
Sox9Q04887 Gm19353-201ENSMUST00000184561 445 ntBASIC13.38□□□□□ -0.27
Sox9Q04887 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.38□□□□□ -0.27
Sox9Q04887 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC13.38□□□□□ -0.27
Sox9Q04887 AC099645.1-201ENSMUST00000226476 1105 ntBASIC13.38□□□□□ -0.27
Sox9Q04887 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Sox9Q04887 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.38□□□□□ -0.27
Sox9Q04887 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.38□□□□□ -0.27
Sox9Q04887 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC13.38□□□□□ -0.27
Sox9Q04887 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sox9Q04887 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC13.37□□□□□ -0.27
Sox9Q04887 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Sox9Q04887 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC13.37□□□□□ -0.27
Sox9Q04887 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Sox9Q04887 Gm12795-201ENSMUST00000117594 539 ntBASIC13.37□□□□□ -0.27
Sox9Q04887 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC13.37□□□□□ -0.27
Sox9Q04887 Gm13045-201ENSMUST00000119019 712 ntBASIC13.37□□□□□ -0.27
Sox9Q04887 Gm11340-201ENSMUST00000119226 412 ntBASIC13.37□□□□□ -0.27
Sox9Q04887 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13.37□□□□□ -0.27
Sox9Q04887 Gm37201-201ENSMUST00000191845 523 ntBASIC13.37□□□□□ -0.27
Sox9Q04887 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC13.37□□□□□ -0.27
Sox9Q04887 Gm8365-201ENSMUST00000197334 648 ntBASIC13.37□□□□□ -0.27
Sox9Q04887 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.37□□□□□ -0.27
Sox9Q04887 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC13.37□□□□□ -0.27
Sox9Q04887 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sox9Q04887 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Sox9Q04887 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Sox9Q04887 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Sox9Q04887 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
Sox9Q04887 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox9Q04887 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.37□□□□□ -0.27
Sox9Q04887 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.36□□□□□ -0.27
Sox9Q04887 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Sox9Q04887 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox9Q04887 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms