Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cux1P53564 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Cux1P53564 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
Cux1P53564 Gm11667-201ENSMUST00000119828 486 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm15782-201ENSMUST00000121073 445 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC19.61■□□□□ 0.73
Cux1P53564 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC19.61■□□□□ 0.73
Cux1P53564 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC19.61■□□□□ 0.73
Cux1P53564 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Cux1P53564 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Cux1P53564 AC123619.2-202ENSMUST00000225097 1568 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Cux1P53564 Mir680-2-201ENSMUST00000102163 110 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm23251-201ENSMUST00000103773 110 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm14058-201ENSMUST00000116082 735 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm11989-201ENSMUST00000117240 672 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm11362-201ENSMUST00000118838 850 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm12208-201ENSMUST00000122004 163 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC19.61■□□□□ 0.73
Cux1P53564 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Cux1P53564 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC19.61■□□□□ 0.73
Cux1P53564 AC125486.1-201ENSMUST00000218701 320 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Olfr1347-205ENSMUST00000220413 964 ntBASIC19.61■□□□□ 0.73
Cux1P53564 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Cux1P53564 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cux1P53564 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Gm43858-201ENSMUST00000199418 1778 ntBASIC19.6■□□□□ 0.73
Cux1P53564 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Cux1P53564 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
Cux1P53564 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Gm11941-201ENSMUST00000119904 610 ntBASIC19.6■□□□□ 0.73
Cux1P53564 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
Cux1P53564 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Gm44551-201ENSMUST00000208804 171 ntBASIC19.6■□□□□ 0.73
Cux1P53564 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cux1P53564 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC19.59■□□□□ 0.73
Cux1P53564 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC19.59■□□□□ 0.73
Cux1P53564 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Cux1P53564 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Cux1P53564 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC19.59■□□□□ 0.73
Cux1P53564 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC19.59■□□□□ 0.73
Cux1P53564 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC19.59■□□□□ 0.73
Cux1P53564 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cux1P53564 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cux1P53564 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cux1P53564 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Cux1P53564 Gm45342-201ENSMUST00000210903 1363 ntBASIC19.58■□□□□ 0.73
Cux1P53564 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Cux1P53564 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cux1P53564 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cux1P53564 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms