Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Pck2-205ENSMUST00000226352 2784 ntBASIC12.53□□□□□ -0.4
Tnfsf4P43488 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.53□□□□□ -0.4
Tnfsf4P43488 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Tnfsf4P43488 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Tnfsf4P43488 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Tnfsf4P43488 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Tnfsf4P43488 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.52□□□□□ -0.4
Tnfsf4P43488 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Tnfsf4P43488 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Tnfsf4P43488 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.52□□□□□ -0.41
Tnfsf4P43488 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Gm18630-201ENSMUST00000222109 1397 ntBASIC12.52□□□□□ -0.41
Tnfsf4P43488 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.52□□□□□ -0.41
Tnfsf4P43488 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Tnfsf4P43488 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.52□□□□□ -0.41
Tnfsf4P43488 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC12.51□□□□□ -0.41
Tnfsf4P43488 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.51□□□□□ -0.41
Tnfsf4P43488 Gm11978-201ENSMUST00000122315 466 ntBASIC12.51□□□□□ -0.41
Tnfsf4P43488 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Gm19220-201ENSMUST00000222682 803 ntBASIC12.51□□□□□ -0.41
Tnfsf4P43488 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Gm45266-201ENSMUST00000210111 2173 ntBASIC12.51□□□□□ -0.41
Tnfsf4P43488 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Tnfsf4P43488 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.5□□□□□ -0.41
Tnfsf4P43488 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.5□□□□□ -0.41
Tnfsf4P43488 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Tnfsf4P43488 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms