Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.55□□□□□ -0.08
Smc1aQ9CU62 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm2445-201ENSMUST00000182798 989 ntBASIC14.54□□□□□ -0.08
Smc1aQ9CU62 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm38223-201ENSMUST00000194484 695 ntBASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm44397-201ENSMUST00000195950 113 ntBASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm18263-201ENSMUST00000220846 1928 ntBASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Mbnl2-204ENSMUST00000227012 2390 ntBASIC14.54□□□□□ -0.08
Smc1aQ9CU62 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Smc1aQ9CU62 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Gm13612-201ENSMUST00000119276 390 ntBASIC14.53□□□□□ -0.08
Smc1aQ9CU62 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms