Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Msh4Q99MT2 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Msh4Q99MT2 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC12.68□□□□□ -0.38
Msh4Q99MT2 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Msh4Q99MT2 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Msh4Q99MT2 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.67□□□□□ -0.38
Msh4Q99MT2 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.67□□□□□ -0.38
Msh4Q99MT2 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Gm8652-201ENSMUST00000181363 964 ntBASIC12.67□□□□□ -0.38
Msh4Q99MT2 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.67□□□□□ -0.38
Msh4Q99MT2 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.67□□□□□ -0.38
Msh4Q99MT2 Gm26315-201ENSMUST00000083890 321 ntBASIC12.67□□□□□ -0.38
Msh4Q99MT2 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.67□□□□□ -0.38
Msh4Q99MT2 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Rubie-203ENSMUST00000227803 2430 ntBASIC12.66□□□□□ -0.38
Msh4Q99MT2 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Gm25857-201ENSMUST00000082788 129 ntBASIC12.66□□□□□ -0.38
Msh4Q99MT2 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Gm9755-201ENSMUST00000032981 1356 ntBASIC12.66□□□□□ -0.38
Msh4Q99MT2 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Msh4Q99MT2 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Msh4Q99MT2 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms