Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm42863-201ENSMUST00000197875 2958 ntBASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm4760-201ENSMUST00000119663 1030 ntBASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm13492-201ENSMUST00000119772 665 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm24749-201ENSMUST00000157838 343 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm19459-201ENSMUST00000176240 835 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 AC161537.1-201ENSMUST00000226199 1015 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm43081-201ENSMUST00000199082 1380 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Mir874-201ENSMUST00000104769 76 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm23699-201ENSMUST00000158835 135 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Ighv5-7-201ENSMUST00000192302 244 ntBASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc88aQ5SNZ0 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc88aQ5SNZ0 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 81.7 ms