Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Limch1Q3UH68 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Gm40466-201ENSMUST00000212174 422 ntBASIC15.31■□□□□ 0.04
Limch1Q3UH68 Gm18473-201ENSMUST00000220543 868 ntBASIC15.31■□□□□ 0.04
Limch1Q3UH68 AC173210.1-201ENSMUST00000222341 1131 ntBASIC15.31■□□□□ 0.04
Limch1Q3UH68 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.31■□□□□ 0.04
Limch1Q3UH68 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.31■□□□□ 0.04
Limch1Q3UH68 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Gm8798-201ENSMUST00000211877 1661 ntBASIC15.31■□□□□ 0.04
Limch1Q3UH68 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Limch1Q3UH68 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Limch1Q3UH68 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Gm8565-201ENSMUST00000183259 1014 ntBASIC15.3■□□□□ 0.04
Limch1Q3UH68 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Gm43818-201ENSMUST00000200605 466 ntBASIC15.3■□□□□ 0.04
Limch1Q3UH68 Gm42853-201ENSMUST00000201273 1387 ntBASIC15.3■□□□□ 0.04
Limch1Q3UH68 AC154276.1-201ENSMUST00000228874 1299 ntBASIC15.3■□□□□ 0.04
Limch1Q3UH68 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Limch1Q3UH68 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Abhd6-203ENSMUST00000225234 1958 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Gm7553-201ENSMUST00000185805 1426 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Gm18630-201ENSMUST00000222109 1397 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Gm9124-201ENSMUST00000191789 1092 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Gm9113-201ENSMUST00000192510 1018 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Gm9131-201ENSMUST00000193557 1089 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Gm9121-201ENSMUST00000193749 1071 ntBASIC15.29■□□□□ 0.04
Limch1Q3UH68 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC15.29■□□□□ 0.04
Limch1Q3UH68 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Limch1Q3UH68 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 81.4 ms