Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Usp39Q3TIX9 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Gm19931-201ENSMUST00000198920 368 ntBASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Gm9899-201ENSMUST00000065519 555 ntBASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp39Q3TIX9 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Gm27194-201ENSMUST00000175753 2936 ntBASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.61□□□□□ -0.39
Usp39Q3TIX9 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Usp39Q3TIX9 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.6□□□□□ -0.39
Usp39Q3TIX9 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 58.3 ms