Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm37917-201ENSMUST00000194711 392 ntBASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm5425-201ENSMUST00000214125 459 ntBASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm15823-201ENSMUST00000064305 670 ntBASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm3052-202ENSMUST00000188254 2224 ntBASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col28a1Q2UY11 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col28a1Q2UY11 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Col28a1Q2UY11 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col28a1Q2UY11 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm10766-202ENSMUST00000194123 606 ntBASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm37748-201ENSMUST00000194379 1140 ntBASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm19931-201ENSMUST00000198920 368 ntBASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.64□□□□□ -0.39
Col28a1Q2UY11 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 AC123834.1-201ENSMUST00000225346 2043 ntBASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col28a1Q2UY11 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col28a1Q2UY11 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms