Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Gm9083-201ENSMUST00000120423 819 ntBASIC14.36□□□□□ -0.11
Col6a1Q04857 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.36□□□□□ -0.11
Col6a1Q04857 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC14.36□□□□□ -0.11
Col6a1Q04857 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Col6a1Q04857 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC14.36□□□□□ -0.11
Col6a1Q04857 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC14.36□□□□□ -0.11
Col6a1Q04857 AA914427-201ENSMUST00000193194 1166 ntBASIC14.36□□□□□ -0.11
Col6a1Q04857 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.36□□□□□ -0.11
Col6a1Q04857 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.36□□□□□ -0.11
Col6a1Q04857 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col6a1Q04857 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Zkscan14-203ENSMUST00000198959 2243 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm5846-201ENSMUST00000193146 1414 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm11628-201ENSMUST00000117568 171 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm8738-201ENSMUST00000172606 329 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm8176-201ENSMUST00000191297 1099 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm37835-201ENSMUST00000193305 361 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm10109-202ENSMUST00000206890 1211 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.35□□□□□ -0.11
Col6a1Q04857 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col6a1Q04857 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col6a1Q04857 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.34□□□□□ -0.11
Col6a1Q04857 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.34□□□□□ -0.11
Col6a1Q04857 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Gm23270-201ENSMUST00000104055 131 ntBASIC14.34□□□□□ -0.11
Col6a1Q04857 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Gm14208-201ENSMUST00000119645 678 ntBASIC14.34□□□□□ -0.11
Col6a1Q04857 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 Gm26185-201ENSMUST00000157692 266 ntBASIC14.34□□□□□ -0.11
Col6a1Q04857 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col6a1Q04857 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC14.34□□□□□ -0.11
Col6a1Q04857 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms