Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Gm38391-201ENSMUST00000191720 4069 ntBASIC11.23□□□□□ -0.61
Nkx3-1P97436 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Gm13316-201ENSMUST00000140537 691 ntBASIC11.22□□□□□ -0.61
Nkx3-1P97436 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC11.22□□□□□ -0.61
Nkx3-1P97436 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Gm6015-201ENSMUST00000217493 1586 ntBASIC11.22□□□□□ -0.61
Nkx3-1P97436 Gm32025-201ENSMUST00000217960 307 ntBASIC11.22□□□□□ -0.61
Nkx3-1P97436 Gm18041-201ENSMUST00000218210 618 ntBASIC11.22□□□□□ -0.61
Nkx3-1P97436 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC11.22□□□□□ -0.61
Nkx3-1P97436 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Nkx3-1P97436 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gm38157-201ENSMUST00000194178 1698 ntBASIC11.21□□□□□ -0.61
Nkx3-1P97436 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Rn7s1-201ENSMUST00000174924 300 ntBASIC11.21□□□□□ -0.61
Nkx3-1P97436 Rn7s2-201ENSMUST00000175032 300 ntBASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gm26461-201ENSMUST00000175064 290 ntBASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gm2383-201ENSMUST00000181461 807 ntBASIC11.21□□□□□ -0.61
Nkx3-1P97436 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.21□□□□□ -0.61
Nkx3-1P97436 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC11.21□□□□□ -0.61
Nkx3-1P97436 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Nkx3-1P97436 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
Nkx3-1P97436 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Nkx3-1P97436 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms