Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gm24543-201ENSMUST00000103867 82 ntBASIC10.53□□□□□ -0.72
Cdx1P18111 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gm5479-201ENSMUST00000160578 435 ntBASIC10.53□□□□□ -0.72
Cdx1P18111 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC10.53□□□□□ -0.72
Cdx1P18111 Gm28631-201ENSMUST00000190740 334 ntBASIC10.53□□□□□ -0.72
Cdx1P18111 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC10.53□□□□□ -0.72
Cdx1P18111 AC135669.1-201ENSMUST00000213585 412 ntBASIC10.53□□□□□ -0.72
Cdx1P18111 Gm7775-201ENSMUST00000218871 853 ntBASIC10.53□□□□□ -0.72
Cdx1P18111 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC10.53□□□□□ -0.72
Cdx1P18111 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gm3365-201ENSMUST00000216296 1480 ntBASIC10.53□□□□□ -0.72
Cdx1P18111 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Gm8775-201ENSMUST00000170943 1327 ntBASIC10.53□□□□□ -0.72
Cdx1P18111 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC10.53□□□□□ -0.72
Cdx1P18111 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Cdx1P18111 Gm18262-201ENSMUST00000222560 1946 ntBASIC10.52□□□□□ -0.72
Cdx1P18111 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Cdx1P18111 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.72
Cdx1P18111 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC10.52□□□□□ -0.72
Cdx1P18111 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC10.52□□□□□ -0.72
Cdx1P18111 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC10.52□□□□□ -0.72
Cdx1P18111 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.72
Cdx1P18111 Gm18983-201ENSMUST00000222884 2729 ntBASIC10.52□□□□□ -0.72
Cdx1P18111 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Cdx1P18111 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Cdx1P18111 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
Cdx1P18111 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 Gm15487-201ENSMUST00000122373 465 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Gm16215-201ENSMUST00000161990 637 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC10.52□□□□□ -0.73
Cdx1P18111 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Gtpbp10-211ENSMUST00000198799 648 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Cdx1P18111 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 AC164565.1-201ENSMUST00000217520 1484 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Cdx1P18111 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
Cdx1P18111 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC10.52□□□□□ -0.73
Cdx1P18111 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC10.52□□□□□ -0.73
Cdx1P18111 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC10.52□□□□□ -0.73
Cdx1P18111 AC151895.1-201ENSMUST00000219025 1742 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC10.52□□□□□ -0.73
Cdx1P18111 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Cdx1P18111 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms