Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.45□□□□□ -0.42
Msx1P13297 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Msx1P13297 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Msx1P13297 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Msx1P13297 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gm22018-201ENSMUST00000104357 131 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.44□□□□□ -0.42
Msx1P13297 Gm12203-201ENSMUST00000118235 598 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Gm15808-201ENSMUST00000119046 604 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Gm12209-201ENSMUST00000120089 596 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.44□□□□□ -0.42
Msx1P13297 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.44□□□□□ -0.42
Msx1P13297 Gm26083-201ENSMUST00000157904 193 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC12.44□□□□□ -0.42
Msx1P13297 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Msx1P13297 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gm26693-201ENSMUST00000181318 1021 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gm27682-201ENSMUST00000183930 110 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Msx1P13297 Gm17823-201ENSMUST00000217830 1006 ntBASIC12.44□□□□□ -0.42
Msx1P13297 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Msx1P13297 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Msx1P13297 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Gm38197-201ENSMUST00000192320 2122 ntBASIC12.44□□□□□ -0.42
Msx1P13297 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC12.44□□□□□ -0.42
Msx1P13297 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Msx1P13297 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Msx1P13297 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC12.44□□□□□ -0.42
Msx1P13297 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Msx1P13297 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Gm26474-201ENSMUST00000116762 122 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm12403-201ENSMUST00000121384 959 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.43□□□□□ -0.42
Msx1P13297 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.43□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 74.9 ms