Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.05□□□□□ -0.16
RaraP11416 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 Itm2b-204ENSMUST00000228637 783 ntBASIC14.05□□□□□ -0.16
RaraP11416 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
RaraP11416 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
RaraP11416 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Gm45743-201ENSMUST00000212701 2795 ntBASIC14.05□□□□□ -0.16
RaraP11416 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
RaraP11416 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RaraP11416 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RaraP11416 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
RaraP11416 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Mir686-201ENSMUST00000102174 109 ntBASIC14.04□□□□□ -0.16
RaraP11416 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.04□□□□□ -0.16
RaraP11416 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC14.04□□□□□ -0.16
RaraP11416 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC14.04□□□□□ -0.16
RaraP11416 Gm42929-201ENSMUST00000198374 1286 ntBASIC14.04□□□□□ -0.16
RaraP11416 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.04□□□□□ -0.16
RaraP11416 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.04□□□□□ -0.16
RaraP11416 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC14.04□□□□□ -0.16
RaraP11416 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
RaraP11416 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
RaraP11416 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RaraP11416 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RaraP11416 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RaraP11416 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RaraP11416 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.03□□□□□ -0.16
RaraP11416 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Mypopos-202ENSMUST00000205975 2321 ntBASIC14.03□□□□□ -0.16
RaraP11416 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC14.03□□□□□ -0.16
RaraP11416 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC14.03□□□□□ -0.16
RaraP11416 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC14.03□□□□□ -0.16
RaraP11416 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.03□□□□□ -0.16
RaraP11416 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RaraP11416 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RaraP11416 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 91.5 ms