Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Lire1P11260 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lire1P11260 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Lire1P11260 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Lire1P11260 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Gm43622-201ENSMUST00000200140 2019 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.39□□□□□ -0.43
Lire1P11260 Gm8584-201ENSMUST00000171982 758 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Gm28911-201ENSMUST00000188837 117 ntBASIC12.39□□□□□ -0.43
Lire1P11260 AY702102-202ENSMUST00000194651 1173 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC12.39□□□□□ -0.43
Lire1P11260 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Lire1P11260 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Gm17794-201ENSMUST00000220252 955 ntBASIC12.39□□□□□ -0.43
Lire1P11260 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Lire1P11260 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC12.39□□□□□ -0.43
Lire1P11260 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Gm10110-202ENSMUST00000228705 3220 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Gm38102-201ENSMUST00000192791 1935 ntBASIC12.39□□□□□ -0.43
Lire1P11260 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lire1P11260 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
Lire1P11260 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Gm9109-201ENSMUST00000120254 1405 ntBASIC12.38□□□□□ -0.43
Lire1P11260 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Lire1P11260 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Gm43860-201ENSMUST00000201742 2705 ntBASIC12.38□□□□□ -0.43
Lire1P11260 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.38□□□□□ -0.43
Lire1P11260 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.38□□□□□ -0.43
Lire1P11260 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.38□□□□□ -0.43
Lire1P11260 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.38□□□□□ -0.43
Lire1P11260 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Lire1P11260 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Lire1P11260 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.38□□□□□ -0.43
Lire1P11260 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.38□□□□□ -0.43
Lire1P11260 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lire1P11260 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Cuzd1-201ENSMUST00000046611 2256 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Lire1P11260 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Lire1P11260 C2cd5-204ENSMUST00000203187 3494 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Gm15991-202ENSMUST00000212123 3565 ntBASIC12.37□□□□□ -0.43
Lire1P11260 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lire1P11260 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms