Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm7899-201ENSMUST00000192935 1897 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Hoxd3P09027 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC10.23□□□□□ -0.77
Hoxd3P09027 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm13255-201ENSMUST00000117255 547 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm6447-201ENSMUST00000118905 835 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm16177-201ENSMUST00000120728 718 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Mir1938-201ENSMUST00000158746 100 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm25025-201ENSMUST00000175018 111 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm8565-201ENSMUST00000183259 1014 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm29011-201ENSMUST00000191059 712 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Ackr1-202ENSMUST00000194046 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm43630-201ENSMUST00000201550 776 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Olfr838-ps1-201ENSMUST00000211872 977 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 AC165260.3-202ENSMUST00000224550 1031 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm2824-203ENSMUST00000226189 1228 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 AC126253.1-201ENSMUST00000227974 824 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC10.23□□□□□ -0.77
Hoxd3P09027 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm37844-201ENSMUST00000192473 4097 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 AC096628.2-201ENSMUST00000225443 1413 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm5639-201ENSMUST00000122305 2403 ntBASIC10.23□□□□□ -0.77
Hoxd3P09027 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Hoxd3P09027 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Hoxd3P09027 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC10.23□□□□□ -0.77
Hoxd3P09027 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm2420-202ENSMUST00000202224 2249 ntBASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm42769-201ENSMUST00000198576 1659 ntBASIC10.22□□□□□ -0.77
Hoxd3P09027 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm12372-201ENSMUST00000121654 768 ntBASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm12205-201ENSMUST00000133940 575 ntTSL 5 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm8062-201ENSMUST00000139696 444 ntBASIC10.22□□□□□ -0.77
Hoxd3P09027 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Phf11b-201ENSMUST00000166121 1184 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Csn3-201ENSMUST00000001667 991 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC10.22□□□□□ -0.77
Hoxd3P09027 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm26722-201ENSMUST00000181237 1048 ntTSL 5 BASIC10.22□□□□□ -0.77
Hoxd3P09027 Gm5370-201ENSMUST00000187187 574 ntBASIC10.22□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms