Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Mthfsd-201ENSMUST00000047282 8312 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Abr-204ENSMUST00000108407 4811 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC10.74□□□□□ -0.69
Hmgb3O54879 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Gm13015-201ENSMUST00000118674 204 ntBASIC10.74□□□□□ -0.69
Hmgb3O54879 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC10.74□□□□□ -0.69
Hmgb3O54879 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC10.74□□□□□ -0.69
Hmgb3O54879 Bloc1s5-203ENSMUST00000224902 612 ntBASIC10.74□□□□□ -0.69
Hmgb3O54879 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Hmgb3O54879 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Hmgb3O54879 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Abca3-203ENSMUST00000117337 5202 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm11557-201ENSMUST00000120200 1008 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm1401-201ENSMUST00000122048 772 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm12260-201ENSMUST00000122447 411 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm9727-201ENSMUST00000161387 555 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm8927-201ENSMUST00000181978 981 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm8116-201ENSMUST00000182917 1201 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC10.73□□□□□ -0.69
Hmgb3O54879 AC121804.3-201ENSMUST00000223420 295 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm3222-201ENSMUST00000071282 990 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm3695-201ENSMUST00000087222 1009 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm10819-201ENSMUST00000099988 561 ntBASIC10.73□□□□□ -0.69
Hmgb3O54879 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Wnk1-224ENSMUST00000203030 8163 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Hmgb3O54879 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Col6a5-203ENSMUST00000190193 9289 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Hmgb3O54879 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Hmgb3O54879 Gm6211-201ENSMUST00000147973 4275 ntBASIC10.72□□□□□ -0.69
Hmgb3O54879 Erbb4-202ENSMUST00000121473 12037 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Dock6-207ENSMUST00000217336 6880 ntAPPRIS P2 TSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Gm7049-201ENSMUST00000223520 1712 ntBASIC10.72□□□□□ -0.69
Hmgb3O54879 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Nrn1-204ENSMUST00000224323 1779 ntBASIC10.72□□□□□ -0.69
Hmgb3O54879 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Ank3-204ENSMUST00000092432 5832 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Hmgb3O54879 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Hmgb3O54879 Plec-206ENSMUST00000074834 14855 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms