Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Pcdh1F7BJK1 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Pcdh1F7BJK1 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Pcdh1F7BJK1 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Pcdh1F7BJK1 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Pcdh1F7BJK1 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Pcdh1F7BJK1 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm44942-201ENSMUST00000096093 2072 ntBASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm13223-201ENSMUST00000118609 747 ntBASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm15376-201ENSMUST00000122258 783 ntBASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Pcdh1F7BJK1 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Pcdh1F7BJK1 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gm6447-201ENSMUST00000118905 835 ntBASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gm19078-201ENSMUST00000206311 727 ntBASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 AC073947.2-201ENSMUST00000215888 1130 ntBASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms