Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Gm44397-201ENSMUST00000195950 113 ntBASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Pck2-205ENSMUST00000226352 2784 ntBASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Trim3Q9R1R2 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm12928-201ENSMUST00000117115 573 ntBASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm27892-201ENSMUST00000185017 106 ntBASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm29608-201ENSMUST00000190444 463 ntBASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm18187-201ENSMUST00000196476 984 ntBASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm42550-201ENSMUST00000201553 960 ntBASIC12.27□□□□□ -0.45
Trim3Q9R1R2 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm5035-201ENSMUST00000215581 927 ntBASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm5356-201ENSMUST00000093326 615 ntBASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Trim3Q9R1R2 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.26□□□□□ -0.45
Trim3Q9R1R2 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms