Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Gm11424-201ENSMUST00000121929 829 ntBASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Mir7221-201ENSMUST00000184009 72 ntBASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Prpf40aQ9R1C7 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Gm13612-201ENSMUST00000119276 390 ntBASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Gm38671-201ENSMUST00000200573 130 ntBASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Prpf40aQ9R1C7 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Prpf40aQ9R1C7 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
Prpf40aQ9R1C7 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Gm6244-201ENSMUST00000178732 841 ntBASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Gm27892-201ENSMUST00000185017 106 ntBASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 AL645783.1-201ENSMUST00000221416 1832 ntBASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 AC154849.3-201ENSMUST00000223733 1660 ntBASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Prpf40aQ9R1C7 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms