Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 AC161252.3-201ENSMUST00000225465 1549 ntBASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.23□□□□□ -0.45
Trim39Q9ESN2 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Gm28760-201ENSMUST00000185995 736 ntBASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Gm31409-201ENSMUST00000209894 710 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.23□□□□□ -0.45
Trim39Q9ESN2 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim39Q9ESN2 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Gm3139-202ENSMUST00000201138 1303 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Gm3183-203ENSMUST00000202911 1303 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Gm12962-202ENSMUST00000144212 691 ntTSL 2 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 AC125206.2-201ENSMUST00000217454 574 ntBASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim39Q9ESN2 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Trim39Q9ESN2 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms