Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Smc1aQ9CU62 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
Smc1aQ9CU62 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Smc1aQ9CU62 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Smc1aQ9CU62 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Smc1aQ9CU62 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.58□□□□□ -0.07
Smc1aQ9CU62 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Gm12485-201ENSMUST00000119641 291 ntBASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Gm42693-201ENSMUST00000196779 631 ntBASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.58□□□□□ -0.08
Smc1aQ9CU62 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Smc1aQ9CU62 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 AC154725.1-201ENSMUST00000224826 1961 ntBASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Gm13689-201ENSMUST00000119360 685 ntBASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Gm16342-201ENSMUST00000124025 1025 ntBASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Gm38671-201ENSMUST00000200573 130 ntBASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Smc1aQ9CU62 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Gm43061-201ENSMUST00000198850 2241 ntBASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Gm29127-201ENSMUST00000188304 517 ntBASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Smc1aQ9CU62 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms