Protein–RNA interactions for Protein: Q8R4R6

Nup35, Nucleoporin NUP53, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup35Q8R4R6 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Nupl1-206ENSMUST00000225111 2936 ntBASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Nup35Q8R4R6 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 AC154262.2-202ENSMUST00000225158 1331 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 CT025624.1-201ENSMUST00000224007 2700 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 AC096628.2-201ENSMUST00000225443 1413 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Mypopos-202ENSMUST00000205975 2321 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Cd63-ps-201ENSMUST00000145417 875 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Gm27321-201ENSMUST00000185021 205 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 AC159114.1-201ENSMUST00000220349 266 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 AC154305.4-201ENSMUST00000224520 614 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Gm44942-201ENSMUST00000096093 2072 ntBASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Nup35Q8R4R6 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Gm27177-202ENSMUST00000183514 2703 ntBASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
Nup35Q8R4R6 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC10.6□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 120.7 ms