Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Gm8617-201ENSMUST00000118796 2222 ntBASIC15.34■□□□□ 0.05
Trim56Q80VI1 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Gm9431-201ENSMUST00000119765 1051 ntBASIC15.34■□□□□ 0.05
Trim56Q80VI1 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Gm27572-201ENSMUST00000183702 255 ntBASIC15.34■□□□□ 0.05
Trim56Q80VI1 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Trim56Q80VI1 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trim56Q80VI1 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Gm15897-201ENSMUST00000117770 1486 ntBASIC15.33■□□□□ 0.05
Trim56Q80VI1 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trim56Q80VI1 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gm12291-201ENSMUST00000121627 311 ntBASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gm10478-201ENSMUST00000084451 396 ntBASIC15.33■□□□□ 0.04
Trim56Q80VI1 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gm44775-201ENSMUST00000207266 1456 ntBASIC15.33■□□□□ 0.04
Trim56Q80VI1 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Trim56Q80VI1 AC153366.2-201ENSMUST00000219461 1984 ntBASIC15.33■□□□□ 0.04
Trim56Q80VI1 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC15.32■□□□□ 0.04
Trim56Q80VI1 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trim56Q80VI1 Gm17420-201ENSMUST00000164753 153 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 304.3 ms