Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC15.34■□□□□ 0.05
Limch1Q3UH68 AC126253.1-201ENSMUST00000227974 824 ntBASIC15.34■□□□□ 0.05
Limch1Q3UH68 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC15.34■□□□□ 0.05
Limch1Q3UH68 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC15.34■□□□□ 0.05
Limch1Q3UH68 AC154747.3-201ENSMUST00000224471 3470 ntBASIC15.34■□□□□ 0.05
Limch1Q3UH68 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC15.34■□□□□ 0.05
Limch1Q3UH68 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Limch1Q3UH68 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Limch1Q3UH68 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Limch1Q3UH68 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Limch1Q3UH68 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Limch1Q3UH68 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Mir1247-201ENSMUST00000116706 82 ntBASIC15.33■□□□□ 0.04
Limch1Q3UH68 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC15.33■□□□□ 0.04
Limch1Q3UH68 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Gm44985-201ENSMUST00000206202 1016 ntBASIC15.33■□□□□ 0.04
Limch1Q3UH68 Gm44974-201ENSMUST00000206387 1279 ntBASIC15.33■□□□□ 0.04
Limch1Q3UH68 AC159896.2-201ENSMUST00000214753 269 ntBASIC15.33■□□□□ 0.04
Limch1Q3UH68 AC154319.1-201ENSMUST00000216330 312 ntBASIC15.33■□□□□ 0.04
Limch1Q3UH68 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 AL589735.1-201ENSMUST00000224353 270 ntBASIC15.33■□□□□ 0.04
Limch1Q3UH68 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Limch1Q3UH68 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gm15198-201ENSMUST00000117283 177 ntBASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gm12384-201ENSMUST00000119228 919 ntBASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC15.32■□□□□ 0.04
Limch1Q3UH68 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC15.32■□□□□ 0.04
Limch1Q3UH68 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC15.32■□□□□ 0.04
Limch1Q3UH68 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Ankra2-208ENSMUST00000226100 1476 ntBASIC15.32■□□□□ 0.04
Limch1Q3UH68 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Limch1Q3UH68 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC15.32■□□□□ 0.04
Limch1Q3UH68 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms