Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Col17a1Q07563 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC19.53■□□□□ 0.72
Col17a1Q07563 Gm16167-201ENSMUST00000160428 1065 ntBASIC19.53■□□□□ 0.72
Col17a1Q07563 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Col17a1Q07563 Gm38007-201ENSMUST00000192187 313 ntBASIC19.53■□□□□ 0.72
Col17a1Q07563 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Col17a1Q07563 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col17a1Q07563 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Col17a1Q07563 Gm16425-201ENSMUST00000118143 3130 ntBASIC19.52■□□□□ 0.72
Col17a1Q07563 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 AC171277.1-201ENSMUST00000216902 1441 ntBASIC19.52■□□□□ 0.72
Col17a1Q07563 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Col17a1Q07563 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Col17a1Q07563 Gm4775-201ENSMUST00000169588 402 ntBASIC19.52■□□□□ 0.72
Col17a1Q07563 Gm26957-201ENSMUST00000182645 977 ntBASIC19.52■□□□□ 0.72
Col17a1Q07563 Gm7627-201ENSMUST00000183205 999 ntBASIC19.52■□□□□ 0.72
Col17a1Q07563 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Zfp445-205ENSMUST00000214626 1220 ntTSL 5 BASIC19.52■□□□□ 0.72
Col17a1Q07563 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col17a1Q07563 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col17a1Q07563 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Col17a1Q07563 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col17a1Q07563 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col17a1Q07563 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col17a1Q07563 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
Col17a1Q07563 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Gm10710-201ENSMUST00000047876 3971 ntBASIC19.51■□□□□ 0.71
Col17a1Q07563 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Col17a1Q07563 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC19.51■□□□□ 0.71
Col17a1Q07563 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC19.51■□□□□ 0.71
Col17a1Q07563 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC19.51■□□□□ 0.71
Col17a1Q07563 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Gm6304-201ENSMUST00000096579 447 ntBASIC19.51■□□□□ 0.71
Col17a1Q07563 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col17a1Q07563 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC19.5■□□□□ 0.71
Col17a1Q07563 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Gm44645-201ENSMUST00000205492 1653 ntBASIC19.5■□□□□ 0.71
Col17a1Q07563 Fbxl12-205ENSMUST00000140702 1555 ntBASIC19.5■□□□□ 0.71
Col17a1Q07563 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC19.5■□□□□ 0.71
Col17a1Q07563 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Col17a1Q07563 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC19.5■□□□□ 0.71
Col17a1Q07563 Gm18367-201ENSMUST00000176139 600 ntBASIC19.5■□□□□ 0.71
Col17a1Q07563 Gm20694-201ENSMUST00000176943 404 ntBASIC19.5■□□□□ 0.71
Col17a1Q07563 Gm37197-201ENSMUST00000195607 401 ntBASIC19.5■□□□□ 0.71
Col17a1Q07563 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Rhox8-201ENSMUST00000071885 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col17a1Q07563 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm25053-201ENSMUST00000103982 133 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm25922-201ENSMUST00000104281 130 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm16459-201ENSMUST00000121443 686 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm24679-201ENSMUST00000158762 111 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC19.49■□□□□ 0.71
Col17a1Q07563 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC19.49■□□□□ 0.71
Col17a1Q07563 AC238811.4-201ENSMUST00000178019 1246 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 AC238940.3-201ENSMUST00000178830 1246 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm5335-201ENSMUST00000182995 1000 ntBASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC19.49■□□□□ 0.71
Col17a1Q07563 Gm2345-201ENSMUST00000193451 589 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms