Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Gm23200-201ENSMUST00000104379 132 ntBASIC11.13□□□□□ -0.63
Col8a1Q00780 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 AA914427-201ENSMUST00000193194 1166 ntBASIC11.13□□□□□ -0.63
Col8a1Q00780 Gm37835-201ENSMUST00000193305 361 ntBASIC11.13□□□□□ -0.63
Col8a1Q00780 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC11.13□□□□□ -0.63
Col8a1Q00780 AC173210.1-201ENSMUST00000222341 1131 ntBASIC11.13□□□□□ -0.63
Col8a1Q00780 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 AC126549.2-201ENSMUST00000223997 1976 ntBASIC11.13□□□□□ -0.63
Col8a1Q00780 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Mypopos-202ENSMUST00000205975 2321 ntBASIC11.13□□□□□ -0.63
Col8a1Q00780 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col8a1Q00780 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Col8a1Q00780 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.12□□□□□ -0.63
Col8a1Q00780 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm28182-201ENSMUST00000188354 2477 ntBASIC11.12□□□□□ -0.63
Col8a1Q00780 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Mmp14-206ENSMUST00000225641 3238 ntBASIC11.12□□□□□ -0.63
Col8a1Q00780 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm13886-201ENSMUST00000117876 1183 ntBASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm4993-201ENSMUST00000118719 1174 ntBASIC11.12□□□□□ -0.63
Col8a1Q00780 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm12502-201ENSMUST00000120197 444 ntBASIC11.12□□□□□ -0.63
Col8a1Q00780 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Col8a1Q00780 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Gm37691-201ENSMUST00000192147 2573 ntBASIC11.12□□□□□ -0.63
Col8a1Q00780 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col8a1Q00780 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC11.11□□□□□ -0.63
Col8a1Q00780 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col8a1Q00780 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC11.11□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms