Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.25□□□□□ -0.61
Nkx3-1P97436 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Nkx3-1P97436 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm11222-201ENSMUST00000119005 738 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm11964-201ENSMUST00000120982 444 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm6161-201ENSMUST00000121942 1102 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm6254-201ENSMUST00000168178 1072 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm6153-201ENSMUST00000172004 1058 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm5641-202ENSMUST00000198699 1080 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 AC122371.3-201ENSMUST00000223402 1061 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 AC132317.1-201ENSMUST00000227227 962 ntBASIC11.24□□□□□ -0.61
Nkx3-1P97436 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Nkx3-1P97436 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Gm4819-201ENSMUST00000182170 1009 ntBASIC11.23□□□□□ -0.61
Nkx3-1P97436 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Nkx3-1P97436 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms