Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Gm8531-201ENSMUST00000188319 893 ntBASIC16.82■□□□□ 0.28
Col18a1P39061 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Col18a1P39061 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Col18a1P39061 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Col18a1P39061 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Col18a1P39061 Gm29499-201ENSMUST00000189151 486 ntBASIC16.81■□□□□ 0.28
Col18a1P39061 Gm28329-201ENSMUST00000191208 689 ntBASIC16.81■□□□□ 0.28
Col18a1P39061 Gm29171-201ENSMUST00000191397 486 ntBASIC16.81■□□□□ 0.28
Col18a1P39061 Gm42779-201ENSMUST00000198807 406 ntBASIC16.81■□□□□ 0.28
Col18a1P39061 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC16.81■□□□□ 0.28
Col18a1P39061 AC134860.1-201ENSMUST00000224867 660 ntBASIC16.81■□□□□ 0.28
Col18a1P39061 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Gm5434-202ENSMUST00000222384 1451 ntBASIC16.81■□□□□ 0.28
Col18a1P39061 Gm5434-201ENSMUST00000071825 1451 ntBASIC16.81■□□□□ 0.28
Col18a1P39061 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC16.81■□□□□ 0.28
Col18a1P39061 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col18a1P39061 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Col18a1P39061 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Gm11470-201ENSMUST00000118868 1475 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Gm12218-201ENSMUST00000117666 399 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 Gm13022-201ENSMUST00000121181 285 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 Gm12407-201ENSMUST00000180219 324 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 Gm4654-201ENSMUST00000183305 982 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Gm3318-201ENSMUST00000217604 1183 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 AC115122.1-201ENSMUST00000224850 1040 ntBASIC16.8■□□□□ 0.28
Col18a1P39061 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
Col18a1P39061 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Col18a1P39061 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Col18a1P39061 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col18a1P39061 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Col18a1P39061 Gm14193-201ENSMUST00000105067 153 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 Gm11663-201ENSMUST00000117888 290 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Gm18204-201ENSMUST00000209835 793 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 CT025602.2-201ENSMUST00000226553 772 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC16.79■□□□□ 0.28
Col18a1P39061 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Gm12419-201ENSMUST00000116649 636 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 Gm12164-201ENSMUST00000121695 551 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 Gm12030-201ENSMUST00000121917 223 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC16.79■□□□□ 0.28
Col18a1P39061 Gm45594-201ENSMUST00000211717 241 ntBASIC16.79■□□□□ 0.28
Col18a1P39061 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Col18a1P39061 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Col18a1P39061 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col18a1P39061 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
Col18a1P39061 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
Col18a1P39061 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Col18a1P39061 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col18a1P39061 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col18a1P39061 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Col18a1P39061 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms