Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm23949-201ENSMUST00000104027 127 ntBASIC15.06■□□□□ 0
Col1a1P11087 Gm9230-201ENSMUST00000188228 532 ntBASIC15.06■□□□□ 0
Col1a1P11087 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Col1a1P11087 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Col1a1P11087 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col1a1P11087 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col1a1P11087 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col1a1P11087 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC15.05■□□□□ 0
Col1a1P11087 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC15.05■□□□□ 0
Col1a1P11087 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
Col1a1P11087 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC15.05■□□□□ 0
Col1a1P11087 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.05■□□□□ 0
Col1a1P11087 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.05■□□□□ 0
Col1a1P11087 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Col1a1P11087 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col1a1P11087 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Gm11941-201ENSMUST00000119904 610 ntBASIC15.05■□□□□ -0
Col1a1P11087 Gm13813-201ENSMUST00000120998 787 ntBASIC15.05■□□□□ -0
Col1a1P11087 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC15.05■□□□□ -0
Col1a1P11087 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC15.05■□□□□ -0
Col1a1P11087 AC163667.3-201ENSMUST00000225774 222 ntBASIC15.05■□□□□ -0
Col1a1P11087 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Col1a1P11087 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
Col1a1P11087 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col1a1P11087 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Col1a1P11087 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC15.04■□□□□ -0
Col1a1P11087 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Col1a1P11087 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.04■□□□□ -0
Col1a1P11087 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC15.04■□□□□ -0
Col1a1P11087 AC159308.2-201ENSMUST00000213592 2325 ntBASIC15.04■□□□□ -0
Col1a1P11087 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
Col1a1P11087 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
Col1a1P11087 Gm11667-201ENSMUST00000119828 486 ntBASIC15.04■□□□□ -0
Col1a1P11087 Gm5732-201ENSMUST00000182596 1007 ntBASIC15.04■□□□□ -0
Col1a1P11087 Gm19994-201ENSMUST00000217086 586 ntBASIC15.04■□□□□ -0
Col1a1P11087 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Gm10076-201ENSMUST00000073238 384 ntBASIC15.04■□□□□ -0
Col1a1P11087 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC15.04■□□□□ -0
Col1a1P11087 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC15.04■□□□□ -0
Col1a1P11087 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC15.04■□□□□ -0
Col1a1P11087 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Col1a1P11087 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC15.04■□□□□ -0
Col1a1P11087 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
Col1a1P11087 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col1a1P11087 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.03■□□□□ -0
Col1a1P11087 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC15.03■□□□□ -0
Col1a1P11087 Gm13035-201ENSMUST00000117496 342 ntBASIC15.03■□□□□ -0
Col1a1P11087 Gm15515-201ENSMUST00000117827 822 ntBASIC15.03■□□□□ -0
Col1a1P11087 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC15.03■□□□□ -0
Col1a1P11087 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Gm19459-201ENSMUST00000176240 835 ntBASIC15.03■□□□□ -0
Col1a1P11087 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 AC122876.1-201ENSMUST00000217619 825 ntBASIC15.03■□□□□ -0
Col1a1P11087 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC15.03■□□□□ -0
Col1a1P11087 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Col1a1P11087 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms