Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm18829-201ENSMUST00000188150 1622 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm12500-202ENSMUST00000186471 2428 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 AC131068.2-201ENSMUST00000226175 1453 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm14350-201ENSMUST00000116642 640 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm16202-201ENSMUST00000117532 544 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm4732-201ENSMUST00000118778 473 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm12384-201ENSMUST00000119228 919 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC10.25□□□□□ -0.77
Hoxd3P09027 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm16337-201ENSMUST00000160368 917 ntTSL 3 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm37857-201ENSMUST00000191784 1199 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm38247-201ENSMUST00000194675 433 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm43906-201ENSMUST00000203194 906 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm44064-201ENSMUST00000204964 1087 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm44985-201ENSMUST00000206202 1016 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Vmn1r4-201ENSMUST00000096612 1034 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Hoxd3P09027 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Il15ra-205ENSMUST00000114833 1607 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm9200-201ENSMUST00000118513 1354 ntBASIC10.25□□□□□ -0.77
Hoxd3P09027 Olfr282-203ENSMUST00000213608 1374 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC10.25□□□□□ -0.77
Hoxd3P09027 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Hoxd3P09027 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm7553-201ENSMUST00000185805 1426 ntBASIC10.24□□□□□ -0.77
Hoxd3P09027 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm13369-201ENSMUST00000119442 987 ntBASIC10.24□□□□□ -0.77
Hoxd3P09027 Tm6sf1-202ENSMUST00000119543 1066 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm4271-201ENSMUST00000174444 973 ntBASIC10.24□□□□□ -0.77
Hoxd3P09027 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm8190-201ENSMUST00000199603 586 ntBASIC10.24□□□□□ -0.77
Hoxd3P09027 AC140451.2-201ENSMUST00000228030 664 ntBASIC10.24□□□□□ -0.77
Hoxd3P09027 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Hoxd3P09027 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm38262-201ENSMUST00000194760 1382 ntBASIC10.24□□□□□ -0.77
Hoxd3P09027 Gm44975-201ENSMUST00000207435 1390 ntBASIC10.24□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms