Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC10.76□□□□□ -0.69
Hmgb3O54879 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Cacna1c-224ENSMUST00000219018 7516 ntTSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Ptprm-203ENSMUST00000224091 3773 ntBASIC10.76□□□□□ -0.69
Hmgb3O54879 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Mir874-201ENSMUST00000104769 76 ntBASIC10.76□□□□□ -0.69
Hmgb3O54879 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Gm15678-201ENSMUST00000117573 960 ntBASIC10.76□□□□□ -0.69
Hmgb3O54879 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC10.76□□□□□ -0.69
Hmgb3O54879 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC10.76□□□□□ -0.69
Hmgb3O54879 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC10.76□□□□□ -0.69
Hmgb3O54879 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Psmb5-202ENSMUST00000227257 622 ntBASIC10.76□□□□□ -0.69
Hmgb3O54879 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Olfr77-202ENSMUST00000217347 5980 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Trpm1-201ENSMUST00000085222 5711 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Hmgb3O54879 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Nsd3-201ENSMUST00000084026 9945 ntAPPRIS P2 TSL 2 BASIC10.76□□□□□ -0.69
Hmgb3O54879 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Bcl9-201ENSMUST00000046521 6102 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Apc-203ENSMUST00000115781 12346 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Hmgb3O54879 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Mon2-201ENSMUST00000037557 5511 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC10.75□□□□□ -0.69
Hmgb3O54879 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC10.75□□□□□ -0.69
Hmgb3O54879 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC10.75□□□□□ -0.69
Hmgb3O54879 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Hmgb3O54879 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms