Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm8463-201ENSMUST00000208573 613 ntBASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm6983-201ENSMUST00000214912 628 ntBASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm17330-201ENSMUST00000221047 165 ntBASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trim3Q9R1R2 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm12403-201ENSMUST00000121384 959 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trim3Q9R1R2 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trim3Q9R1R2 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms