Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm17208-201ENSMUST00000168388 535 ntBASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm27243-201ENSMUST00000183964 521 ntBASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm6334-201ENSMUST00000207083 228 ntBASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Sf3b1Q99NB9 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Sf3b1Q99NB9 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Mospd4-201ENSMUST00000180618 576 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm38158-201ENSMUST00000194617 339 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm45865-201ENSMUST00000211815 945 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm7046-201ENSMUST00000221351 977 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Gm8227-201ENSMUST00000223306 571 ntBASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Sf3b1Q99NB9 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Sf3b1Q99NB9 Gm15370-201ENSMUST00000117158 253 ntBASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms