Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
Trub1Q8C0D0 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Trub1Q8C0D0 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm8213-201ENSMUST00000118191 441 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm13123-201ENSMUST00000122173 492 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Mir1894-201ENSMUST00000122802 81 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm8810-201ENSMUST00000172895 754 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 AC132467.2-202ENSMUST00000227726 559 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm5356-201ENSMUST00000093326 615 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.45□□□□□ -0.26
Trub1Q8C0D0 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Trub1Q8C0D0 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Gm12539-201ENSMUST00000121549 1098 ntBASIC13.44□□□□□ -0.26
Trub1Q8C0D0 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Gm10012-201ENSMUST00000078252 192 ntBASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Gm3052-202ENSMUST00000188254 2224 ntBASIC13.44□□□□□ -0.26
Trub1Q8C0D0 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Gm38049-201ENSMUST00000195698 1372 ntBASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
Trub1Q8C0D0 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm8805-201ENSMUST00000117848 313 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm9816-201ENSMUST00000122292 1414 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm27892-201ENSMUST00000185017 106 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm7067-201ENSMUST00000207698 1249 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Gm45684-201ENSMUST00000210244 1571 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Trub1Q8C0D0 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms