Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim56Q80VI1 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm43438-201ENSMUST00000198133 379 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm9823-201ENSMUST00000051212 327 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm8793-201ENSMUST00000183069 1303 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm43579-201ENSMUST00000202387 1307 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm43364-201ENSMUST00000196046 3274 ntBASIC15.37■□□□□ 0.05
Trim56Q80VI1 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim56Q80VI1 Gm5385-201ENSMUST00000118988 1559 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
Trim56Q80VI1 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm44851-201ENSMUST00000205735 2309 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm7809-201ENSMUST00000153199 742 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm19184-201ENSMUST00000196798 928 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm18054-201ENSMUST00000207539 555 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm44772-201ENSMUST00000207623 1191 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm19309-201ENSMUST00000218295 205 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 n-R5s195-201ENSMUST00000082891 119 ntBASIC15.36■□□□□ 0.05
Trim56Q80VI1 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim56Q80VI1 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 AC151895.1-201ENSMUST00000219025 1742 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm44094-201ENSMUST00000204703 2030 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm11658-201ENSMUST00000120913 1008 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm2467-201ENSMUST00000182266 1010 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm6981-201ENSMUST00000182467 1008 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm5850-201ENSMUST00000192923 1206 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm37008-201ENSMUST00000195712 319 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm45706-201ENSMUST00000213063 2136 ntBASIC15.35■□□□□ 0.05
Trim56Q80VI1 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim56Q80VI1 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 101.1 ms