Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cux1P53564 AC137842.1-201ENSMUST00000227896 2064 ntBASIC19.72■□□□□ 0.75
Cux1P53564 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cux1P53564 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC19.72■□□□□ 0.75
Cux1P53564 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Cux1P53564 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC19.72■□□□□ 0.75
Cux1P53564 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Cux1P53564 Gm37912-201ENSMUST00000191895 3076 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC19.71■□□□□ 0.75
Cux1P53564 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Cux1P53564 Gm37835-201ENSMUST00000193305 361 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Gm43962-201ENSMUST00000203898 190 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Gm10109-202ENSMUST00000206890 1211 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC19.71■□□□□ 0.75
Cux1P53564 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC19.71■□□□□ 0.75
Cux1P53564 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Gm23949-201ENSMUST00000104027 127 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Cux1P53564 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC19.71■□□□□ 0.75
Cux1P53564 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC19.71■□□□□ 0.75
Cux1P53564 AC107638.1-201ENSMUST00000213690 1061 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cux1P53564 Mir219a-1-201ENSMUST00000083621 110 ntBASIC19.71■□□□□ 0.75
Cux1P53564 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Cux1P53564 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC19.7■□□□□ 0.74
Cux1P53564 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC19.7■□□□□ 0.74
Cux1P53564 Gm12616-201ENSMUST00000118594 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm6506-201ENSMUST00000119775 1136 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm10051-201ENSMUST00000145209 414 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Rmrp-201ENSMUST00000157463 271 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC19.7■□□□□ 0.74
Cux1P53564 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Gm12624-201ENSMUST00000177615 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm12621-201ENSMUST00000177760 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm12615-201ENSMUST00000177970 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm12622-201ENSMUST00000177975 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm12627-201ENSMUST00000178412 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm12625-201ENSMUST00000179122 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm12614-201ENSMUST00000179586 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm12613-201ENSMUST00000180323 382 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Gm9230-201ENSMUST00000188228 532 ntBASIC19.7■□□□□ 0.74
Cux1P53564 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC19.7■□□□□ 0.74
Cux1P53564 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC19.7■□□□□ 0.74
Cux1P53564 AL732506.1-201ENSMUST00000226420 281 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Cux1P53564 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC19.7■□□□□ 0.74
Cux1P53564 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cux1P53564 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Cux1P53564 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC19.69■□□□□ 0.74
Cux1P53564 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Gm15711-201ENSMUST00000118889 535 ntBASIC19.69■□□□□ 0.74
Cux1P53564 Gm13408-201ENSMUST00000119822 798 ntBASIC19.69■□□□□ 0.74
Cux1P53564 Gm13935-201ENSMUST00000121859 798 ntBASIC19.69■□□□□ 0.74
Cux1P53564 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC19.69■□□□□ 0.74
Cux1P53564 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC19.69■□□□□ 0.74
Cux1P53564 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC19.69■□□□□ 0.74
Cux1P53564 Ntng1-201ENSMUST00000051253 327 ntBASIC19.69■□□□□ 0.74
Cux1P53564 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC19.69■□□□□ 0.74
Cux1P53564 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cux1P53564 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms