Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Col18a1P39061 Gm13549-201ENSMUST00000118339 796 ntBASIC16.84■□□□□ 0.29
Col18a1P39061 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Col18a1P39061 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC16.84■□□□□ 0.29
Col18a1P39061 Gm9645-201ENSMUST00000197131 792 ntBASIC16.84■□□□□ 0.29
Col18a1P39061 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Col18a1P39061 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Col18a1P39061 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.84■□□□□ 0.29
Col18a1P39061 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Col18a1P39061 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Gm44421-201ENSMUST00000205064 1221 ntBASIC16.84■□□□□ 0.29
Col18a1P39061 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Col18a1P39061 Gm5705-201ENSMUST00000066241 711 ntBASIC16.84■□□□□ 0.29
Col18a1P39061 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.84■□□□□ 0.29
Col18a1P39061 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Col18a1P39061 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Col18a1P39061 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Col18a1P39061 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Col18a1P39061 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Col18a1P39061 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Col18a1P39061 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.83■□□□□ 0.29
Col18a1P39061 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Col18a1P39061 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Col18a1P39061 Gm26013-201ENSMUST00000104404 119 ntBASIC16.83■□□□□ 0.28
Col18a1P39061 Mir874-201ENSMUST00000104769 76 ntBASIC16.83■□□□□ 0.28
Col18a1P39061 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Col18a1P39061 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC16.83■□□□□ 0.28
Col18a1P39061 Gm8894-201ENSMUST00000074642 666 ntBASIC16.83■□□□□ 0.28
Col18a1P39061 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.83■□□□□ 0.28
Col18a1P39061 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Gm37859-201ENSMUST00000195529 2173 ntBASIC16.83■□□□□ 0.28
Col18a1P39061 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Col18a1P39061 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col18a1P39061 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Gm15036-201ENSMUST00000118880 400 ntBASIC16.82■□□□□ 0.28
Col18a1P39061 Gm7722-201ENSMUST00000120646 741 ntBASIC16.82■□□□□ 0.28
Col18a1P39061 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC16.82■□□□□ 0.28
Col18a1P39061 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC16.82■□□□□ 0.28
Col18a1P39061 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Gm18463-201ENSMUST00000207258 474 ntBASIC16.82■□□□□ 0.28
Col18a1P39061 Gm18460-201ENSMUST00000208088 464 ntBASIC16.82■□□□□ 0.28
Col18a1P39061 AC168279.1-201ENSMUST00000214611 382 ntBASIC16.82■□□□□ 0.28
Col18a1P39061 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Col18a1P39061 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Col18a1P39061 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
Col18a1P39061 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col18a1P39061 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
Col18a1P39061 Gm24231-201ENSMUST00000104315 133 ntBASIC16.82■□□□□ 0.28
Col18a1P39061 Gm18367-201ENSMUST00000176139 600 ntBASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms