Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC15.09■□□□□ 0.01
Col1a1P11087 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC15.09■□□□□ 0.01
Col1a1P11087 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.09■□□□□ 0.01
Col1a1P11087 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Col1a1P11087 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col1a1P11087 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col1a1P11087 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC15.08■□□□□ 0.01
Col1a1P11087 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Mir874-201ENSMUST00000104769 76 ntBASIC15.08■□□□□ 0.01
Col1a1P11087 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0.01
Col1a1P11087 Gm14644-201ENSMUST00000116671 647 ntBASIC15.08■□□□□ 0.01
Col1a1P11087 Gm15131-201ENSMUST00000119124 595 ntBASIC15.08■□□□□ 0.01
Col1a1P11087 Gm11450-201ENSMUST00000121144 333 ntBASIC15.08■□□□□ 0.01
Col1a1P11087 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC15.08■□□□□ 0.01
Col1a1P11087 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC15.08■□□□□ 0.01
Col1a1P11087 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC15.08■□□□□ 0.01
Col1a1P11087 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC15.08■□□□□ 0.01
Col1a1P11087 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC15.08■□□□□ 0.01
Col1a1P11087 AC159205.5-202ENSMUST00000224849 386 ntBASIC15.08■□□□□ 0.01
Col1a1P11087 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC15.08■□□□□ 0.01
Col1a1P11087 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Col1a1P11087 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col1a1P11087 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.08■□□□□ 0.01
Col1a1P11087 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC15.08■□□□□ 0
Col1a1P11087 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC15.08■□□□□ 0
Col1a1P11087 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Gm28386-201ENSMUST00000189147 1849 ntBASIC15.08■□□□□ 0
Col1a1P11087 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC15.08■□□□□ 0
Col1a1P11087 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Col1a1P11087 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.08■□□□□ 0
Col1a1P11087 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC15.08■□□□□ 0
Col1a1P11087 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Col1a1P11087 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC15.08■□□□□ 0
Col1a1P11087 Gm8494-201ENSMUST00000178171 1233 ntBASIC15.08■□□□□ 0
Col1a1P11087 Gm19353-201ENSMUST00000184561 445 ntBASIC15.08■□□□□ 0
Col1a1P11087 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Col1a1P11087 AC159819.2-201ENSMUST00000216151 342 ntBASIC15.08■□□□□ 0
Col1a1P11087 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Col1a1P11087 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col1a1P11087 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC15.08■□□□□ 0
Col1a1P11087 Gm10179-201ENSMUST00000086233 688 ntBASIC15.08■□□□□ 0
Col1a1P11087 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col1a1P11087 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Col1a1P11087 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Col1a1P11087 Gm43823-201ENSMUST00000197391 1808 ntBASIC15.07■□□□□ 0
Col1a1P11087 Gm11597-201ENSMUST00000121423 964 ntBASIC15.07■□□□□ 0
Col1a1P11087 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC15.07■□□□□ 0
Col1a1P11087 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col1a1P11087 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC15.07■□□□□ 0
Col1a1P11087 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC15.07■□□□□ 0
Col1a1P11087 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col1a1P11087 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Col1a1P11087 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Col1a1P11087 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Col1a1P11087 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Gm5989-201ENSMUST00000096092 2077 ntBASIC15.06■□□□□ 0
Col1a1P11087 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col1a1P11087 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms